Project name: 1ntv bound default 2 runA NFDNPVYRKT ss: CEECCCCCCC

Status: done

submitted: 2015-02-23 11:18:29, status changed: 2015-03-13 11:17:53

Project settings
Peptide sequence NFDNPVYRKT
Simulation mc cycles50
Peptide secondary structure CEECCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 24.8327 6.28204 22.5359 156
cluster_2.pdb ( medoid) 24.7393 4.56762 26.6226 113
cluster_3.pdb ( medoid) 24.1841 9.13825 28.5757 221
cluster_4.pdb ( medoid) 19.4446 11.417 43.3046 222
cluster_5.pdb ( medoid) 10.9176 9.25112 24.5872 101
cluster_6.pdb ( medoid) 10.1252 6.02457 28.267 61
cluster_7.pdb ( medoid) 6.35157 5.03813 28.5205 32
cluster_8.pdb ( medoid) 5.56972 4.6681 15.9902 26
cluster_9.pdb ( medoid) 2.35526 13.5866 27.4364 32
cluster_10.pdb ( medoid) 2.32077 15.5121 32.4526 36
Laboratory of Theory of Biopolymers 2015