Project name: 2cch bound default D HTLKGRRLVFDN ss: CCCCCCCCCCCC

Status: done

submitted: 2015-02-19 18:28:25, status changed: 2015-03-13 11:18:20

Project settings
Peptide sequence HTLKGRRLVFDN
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
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model_6 View
model_7 View
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model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 56.8091 4.25988 16.8044 242
cluster_2.pdb ( medoid) 43.3084 2.26284 24.616 98
cluster_3.pdb ( medoid) 39.854 2.86044 8.57056 114
cluster_4.pdb ( medoid) 26.795 5.56073 21.9648 149
cluster_5.pdb ( medoid) 22.8936 3.45074 6.69414 79
cluster_6.pdb ( medoid) 21.9582 4.41748 9.62107 97
cluster_7.pdb ( medoid) 21.5823 3.5214 9.61174 76
cluster_8.pdb ( medoid) 20.1747 4.26277 8.56735 86
cluster_9.pdb ( medoid) 12.5107 3.67686 8.65504 46
cluster_10.pdb ( medoid) 1.14705 11.3334 26.5796 13
Laboratory of Theory of Biopolymers 2015