Project name: H18E5OK6A03 3rl2

Status: done

submitted: 2018-01-02 07:43:51, status changed: 2018-01-03 08:15:50

Project settings
Protein sequence(s) GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKEETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM input pdb
Peptide sequence FTVYVFCFL
Simulation mc cycles200
Peptide secondary structure psipred CEEEEEEEC
Unlikely to bind regions
1:B - 99:B 179:A - 274:A
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 52.9243 2.70197 5.08926 143
cluster_2.pdb ( medoid) 36.1027 3.37925 46.1763 122
cluster_3.pdb ( medoid) 28.7715 4.93545 30.9645 142
cluster_4.pdb ( medoid) 23.254 4.04231 32.0206 94
cluster_5.pdb ( medoid) 19.2047 6.97746 55.8548 134
cluster_6.pdb ( medoid) 17.9396 4.0692 20.1951 73
cluster_7.pdb ( medoid) 17.2376 5.16314 32.1889 89
cluster_8.pdb ( medoid) 17.1185 3.79706 25.5701 65
cluster_9.pdb ( medoid) 6.80581 15.2811 52.1458 104
cluster_10.pdb ( medoid) 1.84183 18.4599 61.7523 34

 
Laboratory of Theory of Biopolymers 2015