Project name: 1klu bound default 3 runAB GELIGTLNAAKVPAD ss: CEECCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:19:01, status changed: 2015-03-13 11:18:34

Project settings
Peptide sequence GELIGTLNAAKVPAD
Simulation mc cycles50
Peptide secondary structure CEECCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 34.9849 6.23127 17.452 218
cluster_2.pdb ( medoid) 34.1261 2.46146 7.77122 84
cluster_3.pdb ( medoid) 28.2263 4.71192 11.9312 133
cluster_4.pdb ( medoid) 26.5349 2.78878 10.6018 74
cluster_5.pdb ( medoid) 25.4497 2.82911 9.82999 72
cluster_6.pdb ( medoid) 20.5537 4.47609 23.186 92
cluster_7.pdb ( medoid) 19.3905 2.32072 5.64247 45
cluster_8.pdb ( medoid) 14.579 7.95665 19.7618 116
cluster_9.pdb ( medoid) 11.1563 8.5154 18.0684 95
cluster_10.pdb ( medoid) 8.60657 8.24951 29.3337 71
Laboratory of Theory of Biopolymers 2015