Project name: 2F1W unbound default 2 run A GARAHSS ss: CCCCECC

Status: done

submitted: 2015-02-25 18:46:55, status changed: 2015-03-13 11:18:50

Project settings
Peptide sequence GARAHSS
Simulation mc cycles50
Peptide secondary structure CCCCECC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 30.6889 4.72483 17.6955 145
cluster_2.pdb ( medoid) 30.3907 4.04729 18.9195 123
cluster_3.pdb ( medoid) 23.9435 3.29943 11.9831 79
cluster_4.pdb ( medoid) 23.8046 6.38532 18.2759 152
cluster_5.pdb ( medoid) 16.472 4.61388 12.9998 76
cluster_6.pdb ( medoid) 13.9944 8.86067 32.3819 124
cluster_7.pdb ( medoid) 12.9682 4.93515 19.9974 64
cluster_8.pdb ( medoid) 9.6238 11.8456 29.9584 114
cluster_9.pdb ( medoid) 6.33425 9.63019 27.9389 61
cluster_10.pdb ( medoid) 6.05476 10.2399 23.3525 62
Laboratory of Theory of Biopolymers 2015