Project name: cdpp_1_helder

Status: done

submitted: 2017-09-13 11:54:34, status changed: 2017-09-13 22:49:32

Project settings
Simulation mc cycles50
Peptide secondary structure HHHCCCCCCCCCCCCCCHHH
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 29.4787 2.57813 23.4157 76
cluster_2.pdb ( medoid) 22.906 4.67126 49.194 107
cluster_3.pdb ( medoid) 20.1706 5.85011 28.5736 118
cluster_4.pdb ( medoid) 17.019 1.46895 2.45965 25
cluster_5.pdb ( medoid) 12.2418 16.5825 44.1624 203
cluster_6.pdb ( medoid) 10.9383 8.31941 52.8371 91
cluster_7.pdb ( medoid) 9.98817 13.7162 39.9283 137
cluster_8.pdb ( medoid) 5.0104 12.973 37.7826 65
cluster_9.pdb ( medoid) 4.73482 24.2881 71.6067 115
cluster_10.pdb ( medoid) 4.40245 6.81438 24.7011 30

Laboratory of Theory of Biopolymers 2015