Project name: LCAT_peptide_185_205

Status: done

submitted: 2017-09-12 14:26:19, status changed: 2017-09-13 04:06:33

Project settings
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 32.287 3.28305 38.8176 106
cluster_2.pdb ( medoid) 26.6492 3.90255 7.78384 104
cluster_3.pdb ( medoid) 19.6615 5.79812 24.8967 114
cluster_4.pdb ( medoid) 15.2024 4.60454 19.0456 70
cluster_5.pdb ( medoid) 13.4035 9.54974 44.8764 128
cluster_6.pdb ( medoid) 11.224 10.335 30.742 116
cluster_7.pdb ( medoid) 8.8594 12.1904 28.9028 108
cluster_8.pdb ( medoid) 8.84887 12.0919 34.3857 107
cluster_9.pdb ( medoid) 6.22207 16.0718 41.4 100
cluster_10.pdb ( medoid) 3.0276 15.5238 33.0687 47

Laboratory of Theory of Biopolymers 2015