Project name: 2fvj bound default 2 runA HKLVQLLTTT ss: CHHHHHHHCC

Status: done

submitted: 2015-02-23 11:18:40, status changed: 2015-03-13 11:18:56

Project settings
Peptide sequence HKLVQLLTTT
Simulation mc cycles50
Peptide secondary structure CHHHHHHHCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
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model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 37.5636 2.87513 11.5805 108
cluster_2.pdb ( medoid) 27.5158 6.25095 20.9143 172
cluster_3.pdb ( medoid) 24.7995 5.20171 31.522 129
cluster_4.pdb ( medoid) 22.0686 4.39539 26.8223 97
cluster_5.pdb ( medoid) 20.0409 4.24133 16.8276 85
cluster_6.pdb ( medoid) 18.1685 6.10948 36.9347 111
cluster_7.pdb ( medoid) 17.4184 3.27241 25.6103 57
cluster_8.pdb ( medoid) 15.0941 6.16134 26.9325 93
cluster_9.pdb ( medoid) 10.5581 5.87227 24.4807 62
cluster_10.pdb ( medoid) 6.53743 13.155 39.7852 86
Laboratory of Theory of Biopolymers 2015