Project name: MGP F 1

Status: done

submitted: 2017-09-12 09:24:17, status changed: 2017-09-13 12:49:26

Project settings
Protein sequence(s) MIKLAVTFFVLVAAAQCDVTKHAENHAKHSAPKHEPIVPPAGLMQMQGVQ input pdb
Peptide sequence YTTSYNASDQAK
Simulation mc cycles200
Peptide secondary structure psipred CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 48.1253 3.78179 17.8988 182
cluster_2.pdb ( medoid) 25.2544 7.44426 19.8035 188
cluster_3.pdb ( medoid) 22.4287 6.19743 22.4351 139
cluster_4.pdb ( medoid) 21.8514 4.25602 7.98635 93
cluster_5.pdb ( medoid) 21.5039 4.69683 13.856 101
cluster_6.pdb ( medoid) 10.8476 5.34679 20.2526 58
cluster_7.pdb ( medoid) 10.7564 5.48509 15.1588 59
cluster_8.pdb ( medoid) 8.27835 6.28144 18.3844 52
cluster_9.pdb ( medoid) 7.25774 8.68039 25.1225 63
cluster_10.pdb ( medoid) 5.00294 12.9924 25.3796 65

 
Laboratory of Theory of Biopolymers 2015