Project name: 2p1t bound default A HKILHRLLQD ss: CHHHHHHHHC

Status: done

submitted: 2015-02-19 18:28:31, status changed: 2015-03-13 11:19:27

Project settings
Protein sequence(s) DMPVERILEAELAVEDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP input pdb
Peptide sequence HKILHRLLQD
Simulation mc cycles50
Peptide secondary structure CHHHHHHHHC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 43.964 8.07479 41.4917 355
cluster_2.pdb ( medoid) 41.9001 3.84248 30.4579 161
cluster_3.pdb ( medoid) 35.3722 3.02498 10.4923 107
cluster_4.pdb ( medoid) 34.8914 3.3246 17.294 116
cluster_5.pdb ( medoid) 20.0701 1.14598 4.73751 23
cluster_6.pdb ( medoid) 11.6 5.08619 13.1629 59
cluster_7.pdb ( medoid) 9.67793 5.68303 26.52 55
cluster_8.pdb ( medoid) 5.90793 7.10909 35.9014 42
cluster_9.pdb ( medoid) 3.15909 16.4605 36.0247 52
cluster_10.pdb ( medoid) 1.53055 19.6009 46.1035 30
Laboratory of Theory of Biopolymers 2015