Project name: 3POM unbound default 3 run A PPTLHELYDL ss: CCCHHHHCCC

Status: done

submitted: 2015-02-25 18:47:42, status changed: 2015-03-13 11:19:34

Project settings
Peptide sequence PPTLHELYDL
Simulation mc cycles50
Peptide secondary structure CCCHHHHCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 59.0624 3.70794 21.3658 219
cluster_2.pdb ( medoid) 34.2226 4.70449 16.0103 161
cluster_3.pdb ( medoid) 19.3946 5.36232 10.8697 104
cluster_4.pdb ( medoid) 18.583 5.21982 14.5019 97
cluster_5.pdb ( medoid) 18.4893 6.81476 19.2573 126
cluster_6.pdb ( medoid) 16.9868 6.29899 21.6766 107
cluster_7.pdb ( medoid) 15.9525 3.6358 7.1247 58
cluster_8.pdb ( medoid) 12.7214 3.38013 24.0934 43
cluster_9.pdb ( medoid) 9.13161 6.68009 15.6075 61
cluster_10.pdb ( medoid) 2.8384 8.45548 24.9077 24
Laboratory of Theory of Biopolymers 2015