Project name: H31E6OK6IAd 2iad

Status: done

submitted: 2017-12-06 09:11:10, status changed: 2017-12-07 07:08:46

Project settings
Protein sequence(s) IEADHVGFYGTTVYQSPGDIGQYTHEFDGDELFYVDLDKKKTVWRLPEFGQLILFEPQGGLQNIAAEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVTDGVYETSFLVNRDHSFHKLSYLTFIPSDDDIYDCKVEHWGLEEPVLKHWSSADLVPRRHFVVQFKGECYYTNGTQRIRLVTRYIYNREEYVRYDSDVGEYRAVTELGRPDAEYWNSQPEILERTRAEVDTACRHNYEGPETSTSLRRLEQPNVAISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSLKSPITVEWSS input pdb
Peptide sequence KVSEFRWYRY
Simulation mc cycles200
Peptide secondary structure psipred CCCCEEEEEC
Flexible regions
Unlikely to bind regions
190:B - 93:B 186:A - 80:A
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 47.2864 4.71594 34.8597 223
cluster_2.pdb ( medoid) 24.8571 5.83334 16.6004 145
cluster_3.pdb ( medoid) 24.0979 4.6477 12.4668 112
cluster_4.pdb ( medoid) 19.8364 8.21723 33.6978 163
cluster_5.pdb ( medoid) 10.5272 6.55447 34.1223 69
cluster_6.pdb ( medoid) 7.84112 6.50417 19.5847 51
cluster_7.pdb ( medoid) 7.21328 10.5361 23.8506 76
cluster_8.pdb ( medoid) 6.09668 9.51337 25.3993 58
cluster_9.pdb ( medoid) 5.73571 7.67124 23.7902 44
cluster_10.pdb ( medoid) 4.93861 11.9467 32.9407 59

 
Laboratory of Theory of Biopolymers 2015