Project name: bcf2276882880e9

Status: done

submitted: 2018-07-09 11:45:53, status changed: 2018-07-24 06:08:26

Project settings
Protein sequence(s) VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAEHAAT input pdb
Peptide sequence SFGDGFADF
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 30.3539 4.94171 14.4911 150
cluster_2.pdb ( medoid) 23.7129 6.07264 24.4083 144
cluster_3.pdb ( medoid) 19.542 5.78242 30.2538 113
cluster_4.pdb ( medoid) 17.7279 8.29201 40.3751 147
cluster_5.pdb ( medoid) 16.5377 5.86539 27.8139 97
cluster_6.pdb ( medoid) 13.4128 4.62245 33.6185 62
cluster_7.pdb ( medoid) 13.0942 6.03321 18.4567 79
cluster_8.pdb ( medoid) 10.8056 6.38556 20.8337 69
cluster_9.pdb ( medoid) 5.15361 11.4483 31.5406 59
cluster_10.pdb ( medoid) 5.0861 15.7291 40.2914 80

 
Laboratory of Theory of Biopolymers 2015