Project name: bd41ac5c89a1a5e

Status: done

submitted: 2018-07-08 06:23:18, status changed: 2018-07-23 00:21:55

Project settings
Peptide sequence DGASPDYVLVEAEA
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCEEEEEECC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 42.8766 2.68212 22.144 115
cluster_2.pdb ( medoid) 33.9103 3.83365 12.6356 130
cluster_3.pdb ( medoid) 30.6445 4.43799 13.4571 136
cluster_4.pdb ( medoid) 23.1239 8.21661 33.6826 190
cluster_5.pdb ( medoid) 20.8836 4.3096 14.5551 90
cluster_6.pdb ( medoid) 16.1059 7.32649 34.4952 118
cluster_7.pdb ( medoid) 9.70966 8.4452 29.2635 82
cluster_8.pdb ( medoid) 8.94962 7.0394 27.8721 63
cluster_9.pdb ( medoid) 5.82785 8.23631 19.4542 48
cluster_10.pdb ( medoid) 2.28135 12.2734 32.4093 28

Laboratory of Theory of Biopolymers 2015