Project name: LCAT_peptide_1

Status: done

submitted: 2017-09-12 14:23:02, status changed: 2017-09-13 18:00:40

Project settings
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 51.7094 2.03058 22.0569 105
cluster_2.pdb ( medoid) 19.6627 5.49264 34.9249 108
cluster_3.pdb ( medoid) 17.382 6.50096 24.7518 113
cluster_4.pdb ( medoid) 11.7438 8.68544 26.0908 102
cluster_5.pdb ( medoid) 10.1077 14.7412 44.9217 149
cluster_6.pdb ( medoid) 8.43397 15.1767 38.7198 128
cluster_7.pdb ( medoid) 7.74164 14.338 33.4038 111
cluster_8.pdb ( medoid) 7.44595 8.19238 21.0972 61
cluster_9.pdb ( medoid) 7.44378 9.26949 45.3403 69
cluster_10.pdb ( medoid) 5.28849 10.2109 33.8652 54

Laboratory of Theory of Biopolymers 2015