Project name: 1aqd_A-D_KMSEHILLL

Status: done

submitted: 2023-06-02 08:53:14, status changed: 2023-06-03 01:46:37

Project settings
Peptide sequence KMSEHILLL
Simulation mc cycles50
Peptide secondary structure psipred CCCCCEEEC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 40.1065 5.43552 15.1875 218
cluster_2.pdb ( medoid) 28.8404 3.53671 8.68311 102
cluster_3.pdb ( medoid) 27.2506 3.26598 24.256 89
cluster_4.pdb ( medoid) 19.9736 5.35708 29.5722 107
cluster_5.pdb ( medoid) 19.5729 3.88291 10.5228 76
cluster_6.pdb ( medoid) 18.9786 6.95521 32.1769 132
cluster_7.pdb ( medoid) 17.4887 4.97463 9.83662 87
cluster_8.pdb ( medoid) 11.3777 6.67976 16.3947 76
cluster_9.pdb ( medoid) 9.48542 6.53635 14.319 62
cluster_10.pdb ( medoid) 9.32806 5.46737 11.7857 51