Project name: 1nln bound default A GVQSLKRRRCF ss: CCCEEEEEEEC

Status: done

submitted: 2015-02-19 18:28:16, status changed: 2015-03-13 11:20:35

Project settings
Peptide sequence GVQSLKRRRCF
Simulation mc cycles50
Peptide secondary structure CCCEEEEEEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
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model_6 View
model_7 View
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 39.5004 2.93668 23.7045 116
cluster_2.pdb ( medoid) 19.5144 6.66174 41.4024 130
cluster_3.pdb ( medoid) 14.4559 12.59 40.7255 182
cluster_4.pdb ( medoid) 12.6442 7.59239 32.5051 96
cluster_5.pdb ( medoid) 11.2876 5.84715 26.7434 66
cluster_6.pdb ( medoid) 11.1762 8.5897 18.2779 96
cluster_7.pdb ( medoid) 10.396 5.96385 17.6019 62
cluster_8.pdb ( medoid) 8.96083 7.0306 28.0239 63
cluster_9.pdb ( medoid) 7.49813 5.6014 30.5356 42
cluster_10.pdb ( medoid) 5.91473 7.94626 29.5625 47
Laboratory of Theory of Biopolymers 2015