Project name: 1nln bound default A GVQSLKRRRCF ss: CCCEEEEEEEC

Status: done

submitted: 2015-02-19 18:28:16, status changed: 2015-03-13 11:20:35

Project settings
Protein sequence(s) GSSEQELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAACGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNSPQVQPTLRRNQEQLYSFLERHSPYFRSHSAQIRSATSFCHLKNM input pdb
Peptide sequence GVQSLKRRRCF
Simulation mc cycles50
Peptide secondary structure CCCEEEEEEEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_4 View
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model_7 View
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
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Trajectories
replica_1 Download
replica_2 Download
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replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 39.5004 2.93668 23.7045 116
cluster_2.pdb ( medoid) 19.5144 6.66174 41.4024 130
cluster_3.pdb ( medoid) 14.4559 12.59 40.7255 182
cluster_4.pdb ( medoid) 12.6442 7.59239 32.5051 96
cluster_5.pdb ( medoid) 11.2876 5.84715 26.7434 66
cluster_6.pdb ( medoid) 11.1762 8.5897 18.2779 96
cluster_7.pdb ( medoid) 10.396 5.96385 17.6019 62
cluster_8.pdb ( medoid) 8.96083 7.0306 28.0239 63
cluster_9.pdb ( medoid) 7.49813 5.6014 30.5356 42
cluster_10.pdb ( medoid) 5.91473 7.94626 29.5625 47
Laboratory of Theory of Biopolymers 2015