Project name: 2jam bound default 2 runA GVSKFA ss: CCEECC

Status: done

submitted: 2015-02-23 11:18:41, status changed: 2015-03-13 11:20:41

Project settings
Peptide sequence GVSKFA
Simulation mc cycles50
Peptide secondary structure CCEECC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 104.104 1.00861 14.1695 105
cluster_2.pdb ( medoid) 28.4365 3.6221 30.3767 103
cluster_3.pdb ( medoid) 24.3488 6.5301 29.271 159
cluster_4.pdb ( medoid) 19.9813 5.40507 24.6362 108
cluster_5.pdb ( medoid) 19.2674 9.5498 33.0458 184
cluster_6.pdb ( medoid) 14.2629 6.02961 12.4501 86
cluster_7.pdb ( medoid) 13.4744 5.56611 18.2281 75
cluster_8.pdb ( medoid) 12.7767 4.22644 15.1807 54
cluster_9.pdb ( medoid) 9.91465 6.55595 18.4035 65
cluster_10.pdb ( medoid) 3.93806 15.4899 42.1953 61
Laboratory of Theory of Biopolymers 2015