Project name: 2dze bound default AB LARRLR ss: CEEEEC

Status: done

submitted: 2015-02-19 18:28:26, status changed: 2015-03-13 11:20:47

Project settings
Peptide sequence LARRLR
Simulation mc cycles50
Peptide secondary structure CEEEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 57.9797 2.22492 34.8832 129
cluster_2.pdb ( medoid) 38.582 2.72148 28.847 105
cluster_3.pdb ( medoid) 30.3263 4.02291 29.4429 122
cluster_4.pdb ( medoid) 16.5425 6.40773 18.1552 106
cluster_5.pdb ( medoid) 15.778 6.21118 33.2858 98
cluster_6.pdb ( medoid) 14.1417 9.8998 36.4918 140
cluster_7.pdb ( medoid) 9.93676 10.5668 38.6232 105
cluster_8.pdb ( medoid) 8.28892 7.96244 18.3254 66
cluster_9.pdb ( medoid) 6.06984 11.8619 27.3159 72
cluster_10.pdb ( medoid) 5.54314 10.283 38.7039 57
Laboratory of Theory of Biopolymers 2015