Project name: c57121971421d27

Status: done

submitted: 2017-12-07 20:24:41, status changed: 2017-12-07 23:49:22

Project settings
Peptide sequence GAGYNSEDEYEA
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCHHHHHC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 34.5808 2.68935 6.01557 93
cluster_2.pdb ( medoid) 29.0428 7.60946 32.697 221
cluster_3.pdb ( medoid) 24.1074 5.43402 29.1119 131
cluster_4.pdb ( medoid) 21.2638 3.62119 14.5859 77
cluster_5.pdb ( medoid) 18.9667 7.69772 35.7347 146
cluster_6.pdb ( medoid) 16.5895 3.43591 11.1707 57
cluster_7.pdb ( medoid) 14.2304 6.60558 26.2542 94
cluster_8.pdb ( medoid) 10.3951 8.56173 37.5303 89
cluster_9.pdb ( medoid) 5.00606 12.5848 28.3032 63
cluster_10.pdb ( medoid) 4.34858 6.66884 11.4422 29

Laboratory of Theory of Biopolymers 2015