Project name: ASGPR & sv6D

Status: done

submitted: 2018-07-12 05:32:02, status changed: 2018-07-25 23:29:08

Project settings
Protein sequence(s) CPVNWVEHERSCYWFSRSGKAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELCPVNWVEHERSCYWFSRSGKAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETEL input pdb
Peptide sequence NQHTPR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 86.6402 1.43121 15.4175 124
cluster_2.pdb ( medoid) 60.1655 5.13583 26.2904 309
cluster_3.pdb ( medoid) 55.1275 2.57585 30.2907 142
cluster_4.pdb ( medoid) 27.754 3.60308 9.88564 100
cluster_5.pdb ( medoid) 20.3929 1.52014 4.24537 31
cluster_6.pdb ( medoid) 13.4796 7.41864 30.2364 100
cluster_7.pdb ( medoid) 7.3509 6.1217 28.3404 45
cluster_8.pdb ( medoid) 6.30562 10.6254 32.7313 67
cluster_9.pdb ( medoid) 6.18411 9.54059 35.9638 59
cluster_10.pdb ( medoid) 1.785 12.8851 33.5381 23

 
Laboratory of Theory of Biopolymers 2015