Project name: 1n12 bound default 2 runC SDVAFRGNLLD ss: CEEEEEEEEEC

Status: done

submitted: 2015-02-23 11:18:28, status changed: 2015-03-13 11:21:14

Project settings
Peptide sequence SDVAFRGNLLD
Simulation mc cycles50
Peptide secondary structure CEEEEEEEEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_4 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 16.3235 6.30993 20.6089 103
cluster_2.pdb ( medoid) 12.3676 12.8562 26.4525 159
cluster_3.pdb ( medoid) 11.508 9.29788 22.9204 107
cluster_4.pdb ( medoid) 10.277 9.14665 23.9333 94
cluster_5.pdb ( medoid) 10.2479 8.7823 23.5907 90
cluster_6.pdb ( medoid) 9.42303 7.53473 24.0527 71
cluster_7.pdb ( medoid) 9.33221 13.1802 27.6472 123
cluster_8.pdb ( medoid) 8.11405 11.2151 30.513 91
cluster_9.pdb ( medoid) 7.2308 10.3723 25.8949 75
cluster_10.pdb ( medoid) 6.92931 12.5554 29.3062 87
Laboratory of Theory of Biopolymers 2015