Project name: 1h6w bound default 3 runA SLNYIIKVKE ss: CCEEEEECCC

Status: done

submitted: 2015-02-23 11:18:59, status changed: 2015-03-13 11:21:40

Project settings
Protein sequence(s) TGATLNGRGSTTSMRGVVKLTTTAGSQSGGDASSALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITGTVNMTGGYIQGKRVVTQNEIDRTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMR input pdb
Peptide sequence SLNYIIKVKE
Simulation mc cycles50
Peptide secondary structure CCEEEEECCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 47.9164 2.14958 16.8214 103
cluster_2.pdb ( medoid) 37.2996 2.7078 12.317 101
cluster_3.pdb ( medoid) 29.9009 3.5116 15.5664 105
cluster_4.pdb ( medoid) 15.9375 4.07843 7.91584 65
cluster_5.pdb ( medoid) 11.935 6.70299 19.0894 80
cluster_6.pdb ( medoid) 8.6506 8.43872 17.1826 73
cluster_7.pdb ( medoid) 7.0797 8.47494 15.0285 60
cluster_8.pdb ( medoid) 5.51954 7.60933 14.9401 42
cluster_9.pdb ( medoid) 4.31223 8.34836 17.7022 36
cluster_10.pdb ( medoid) 4.11668 8.50199 19.0184 35
Laboratory of Theory of Biopolymers 2015