Project name: 2B9F unbound default 3 run A RRNLKGLNLNLH ss: CCCCCCCCCCCC

Status: done

submitted: 2015-02-25 18:47:37, status changed: 2015-03-13 11:21:47

Project settings
Peptide sequence RRNLKGLNLNLH
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
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model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 31.9628 1.1576 2.03644 37
cluster_2.pdb ( medoid) 23.7066 6.4539 39.5668 153
cluster_3.pdb ( medoid) 19.1032 7.27626 31.5147 139
cluster_4.pdb ( medoid) 15.7871 8.86799 22.4725 140
cluster_5.pdb ( medoid) 13.0138 10.9883 21.0007 143
cluster_6.pdb ( medoid) 12.0216 10.4812 29.2574 126
cluster_7.pdb ( medoid) 10.2034 12.5448 55.4127 128
cluster_8.pdb ( medoid) 9.34007 10.2783 43.8792 96
cluster_9.pdb ( medoid) 7.70082 1.03885 2.82331 8
cluster_10.pdb ( medoid) 5.74485 5.22207 17.1276 30
Laboratory of Theory of Biopolymers 2015