Project name: 2v3s bound default 2 runB GRFQVT ss: CCCEEC

Status: done

submitted: 2015-02-23 11:18:44, status changed: 2015-03-13 11:22:01

Project settings
Protein sequence(s) GPISLVLRLRNSKKELNDIRFEFTPGRDTAEGVSQELISAGLVDGRDLVIVAANLQKIVEEPQSNRSVTFKLASGVEGSDIPDDGKLIGFAQLSIS input pdb
Peptide sequence GRFQVT
Simulation mc cycles50
Peptide secondary structure CCCEEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 33.4452 4.18596 27.6 140
cluster_2.pdb ( medoid) 28.9308 2.83435 11.8741 82
cluster_3.pdb ( medoid) 28.5804 8.64229 29.9885 247
cluster_4.pdb ( medoid) 17.1129 3.03865 11.943 52
cluster_5.pdb ( medoid) 15.6916 6.24537 23.8952 98
cluster_6.pdb ( medoid) 14.3998 7.7779 27.5615 112
cluster_7.pdb ( medoid) 9.43464 7.52546 28.3849 71
cluster_8.pdb ( medoid) 9.30634 7.30684 29.6254 68
cluster_9.pdb ( medoid) 7.13002 10.6592 29.7617 76
cluster_10.pdb ( medoid) 3.59303 15.0291 33.8208 54
Laboratory of Theory of Biopolymers 2015