Project name: 1lvm bound default 3 runA EATQLMN ss: CCEECCC

Status: done

submitted: 2015-02-23 11:19:01, status changed: 2015-03-13 11:22:09

Project settings
Protein sequence(s) GHHHHHHHGESLFKGPRDYNPISSTICHLTNESDGHTTSLYGIGFGPFIITNKHLFRRNNGTLLVQSLHGVFKVKNTTTLQQHLIDGRDMIIIRMPKDFPPFPQKLKFREPQREERICLVTTNFQTKSMSSMVSDTSCTFPSSDGIFWKHWIQTKDGQCGSPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNFMELLTNQEAQQWVSGWRLNADSVLWGGHKVFMDKP input pdb
Peptide sequence EATQLMN
Simulation mc cycles50
Peptide secondary structure CCEECCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
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model_4 Download
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model_6 Download
model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 32.2718 3.7494 22.8829 121
cluster_2.pdb ( medoid) 29.4406 3.7703 27.5294 111
cluster_3.pdb ( medoid) 28.4501 3.97187 12.6532 113
cluster_4.pdb ( medoid) 19.0556 7.6618 26.3685 146
cluster_5.pdb ( medoid) 17.9323 4.96311 18.878 89
cluster_6.pdb ( medoid) 12.8649 5.98526 18.5511 77
cluster_7.pdb ( medoid) 12.4498 7.95194 24.5178 99
cluster_8.pdb ( medoid) 9.96202 9.93774 30.9383 99
cluster_9.pdb ( medoid) 7.9616 11.8067 36.4545 94
cluster_10.pdb ( medoid) 3.17864 16.0446 30.8815 51
Laboratory of Theory of Biopolymers 2015