Project name: 2F1W unbound default 3 run A GARAHSS ss: CCCCECC

Status: done

submitted: 2015-02-25 18:47:39, status changed: 2015-03-13 11:22:46

Project settings
Peptide sequence GARAHSS
Simulation mc cycles50
Peptide secondary structure CCCCECC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 26.7474 4.48642 19.6286 120
cluster_2.pdb ( medoid) 25.225 7.5322 27.1206 190
cluster_3.pdb ( medoid) 15.1521 7.5897 22.4838 115
cluster_4.pdb ( medoid) 12.9003 9.76719 37.3352 126
cluster_5.pdb ( medoid) 12.4628 7.78313 29.2693 97
cluster_6.pdb ( medoid) 11.8945 7.31432 25.0659 87
cluster_7.pdb ( medoid) 10.0549 6.46448 33.3629 65
cluster_8.pdb ( medoid) 8.98438 7.7913 17.9262 70
cluster_9.pdb ( medoid) 7.89047 7.60411 18.6358 60
cluster_10.pdb ( medoid) 6.53179 10.7168 21.6506 70
Laboratory of Theory of Biopolymers 2015