Project name: d1eca00673d8c14

Status: done

submitted: 2017-12-06 06:08:06, status changed: 2017-12-06 09:14:47

Project settings
Protein sequence(s) APVSIWSRVVQFGTGWGFWVSGHVFITAKHVAPPKGTEIFGRKPGDFTVTSSGDFLKYYFTSAVRPDIPAMVLENGCQEGVVASVLVKRASGEMLALAVRMGSQAAIKIGSAVVHGQTGMLLTGSNAKAQDLGTIPGDAGCPYVYKKGNTWVVIGVHVAATRSGNTVIAATHGEPTLEALEFQ input pdb
Peptide sequence NSLKVLG
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 22.8273 4.99401 15.7438 114
cluster_2.pdb ( medoid) 21.2607 7.1023 29.5969 151
cluster_3.pdb ( medoid) 20.8779 6.08298 38.2141 127
cluster_4.pdb ( medoid) 18.4269 8.14027 45.0183 150
cluster_5.pdb ( medoid) 17.3572 8.52672 23.561 148
cluster_6.pdb ( medoid) 12.1193 5.94095 17.3865 72
cluster_7.pdb ( medoid) 9.22091 7.37455 25.2534 68
cluster_8.pdb ( medoid) 8.90184 7.97588 28.548 71
cluster_9.pdb ( medoid) 6.1878 8.88846 22.2743 55
cluster_10.pdb ( medoid) 3.05918 14.3829 30.8633 44

 
Laboratory of Theory of Biopolymers 2015