Project name: d49eb1c613609e2

Status: done

submitted: 2018-10-10 03:32:56, status changed: 2018-10-10 06:41:37

Project settings
Peptide sequence QVVSG
Simulation mc cycles50
Peptide secondary structure psipred CCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 23.4982 3.65986 7.76213 86
cluster_2.pdb ( medoid) 20.3193 5.01986 19.7381 102
cluster_3.pdb ( medoid) 18.1741 7.81332 22.9953 142
cluster_4.pdb ( medoid) 17.257 10.3147 39.6429 178
cluster_5.pdb ( medoid) 14.0229 11.8378 34.0336 166
cluster_6.pdb ( medoid) 10.5979 8.39789 27.8888 89
cluster_7.pdb ( medoid) 9.39802 4.89465 14.0117 46
cluster_8.pdb ( medoid) 7.72955 10.738 26.0907 83
cluster_9.pdb ( medoid) 7.24477 10.0762 22.1223 73
cluster_10.pdb ( medoid) 4.12227 8.49047 20.3291 35

Laboratory of Theory of Biopolymers 2015