Project name: 2iv9 bound default 3 runAB SFGDGFADF ss: CCCCHHHHC

Status: done

submitted: 2015-02-23 11:19:15, status changed: 2015-03-13 11:23:59

Project settings
Peptide sequence SFGDGFADF
Simulation mc cycles50
Peptide secondary structure CCCCHHHHC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 50.7576 2.64 10.0777 134
cluster_2.pdb ( medoid) 24.9964 10.8416 35.1664 271
cluster_3.pdb ( medoid) 18.4604 4.00858 9.20978 74
cluster_4.pdb ( medoid) 13.7361 3.71284 8.6112 51
cluster_5.pdb ( medoid) 10.7354 7.6383 29.5037 82
cluster_6.pdb ( medoid) 7.07832 13.9864 44.9425 99
cluster_7.pdb ( medoid) 6.98654 14.5995 36.6428 102
cluster_8.pdb ( medoid) 3.19384 16.5945 46.5983 53
cluster_9.pdb ( medoid) 2.88302 10.7526 28.8505 31
cluster_10.pdb ( medoid) 2.59949 10.002 20.4568 26
Laboratory of Theory of Biopolymers 2015