Project name: d90991dbe1d6b6

Status: done

submitted: 2018-07-07 07:58:36, status changed: 2018-07-22 00:46:17

Project settings
Peptide sequence DYVLME
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 28.3489 8.14846 29.8172 231
cluster_2.pdb ( medoid) 27.9359 5.36943 17.817 150
cluster_3.pdb ( medoid) 27.9203 3.65325 11.0006 102
cluster_4.pdb ( medoid) 25.0499 4.03195 19.9038 101
cluster_5.pdb ( medoid) 21.4814 3.30518 9.3144 71
cluster_6.pdb ( medoid) 14.5574 5.15202 13.9564 75
cluster_7.pdb ( medoid) 9.4909 9.37741 30.0863 89
cluster_8.pdb ( medoid) 5.42452 11.2452 26.7285 61
cluster_9.pdb ( medoid) 3.79562 13.7 28.3018 52
cluster_10.pdb ( medoid) 3.7531 18.1183 40.0236 68

Laboratory of Theory of Biopolymers 2015