Project name: 2d5w bound default 3 runB ASKTK ss: CCEEC

Status: done

submitted: 2015-02-23 11:19:13, status changed: 2015-03-13 11:25:58

Project settings
Peptide sequence ASKTK
Simulation mc cycles50
Peptide secondary structure CCEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 40.5622 4.41297 31.4238 179
cluster_2.pdb ( medoid) 30.6971 8.04636 43.6746 247
cluster_3.pdb ( medoid) 15.2803 6.80617 27.9332 104
cluster_4.pdb ( medoid) 10.1784 11.3967 51.2408 116
cluster_5.pdb ( medoid) 8.33836 8.75472 23.7128 73
cluster_6.pdb ( medoid) 6.96527 9.76273 40.492 68
cluster_7.pdb ( medoid) 4.97436 11.8608 33.9417 59
cluster_8.pdb ( medoid) 4.45285 16.394 41.2464 73
cluster_9.pdb ( medoid) 3.38729 15.0563 41.618 51
cluster_10.pdb ( medoid) 2.87673 10.4285 34.1435 30
Laboratory of Theory of Biopolymers 2015