Project name: 3d1e bound default A GQLGLF ss: CECCCC

Status: done

submitted: 2015-02-19 18:28:34, status changed: 2015-03-13 11:26:16

Project settings
Protein sequence(s) MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL input pdb
Peptide sequence GQLGLF
Simulation mc cycles50
Peptide secondary structure CECCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 43.6149 2.72842 26.9866 119
cluster_2.pdb ( medoid) 26.901 3.45712 23.2759 93
cluster_3.pdb ( medoid) 13.9993 14.5007 54.4906 203
cluster_4.pdb ( medoid) 9.61112 8.21965 35.1019 79
cluster_5.pdb ( medoid) 9.48847 19.0758 42.2522 181
cluster_6.pdb ( medoid) 6.07614 6.58313 14.0135 40
cluster_7.pdb ( medoid) 5.44279 5.87934 10.726 32
cluster_8.pdb ( medoid) 4.4989 8.89105 25.2584 40
cluster_9.pdb ( medoid) 3.83362 17.4769 45.481 67
cluster_10.pdb ( medoid) 2.60144 17.6825 42.6246 46
Laboratory of Theory of Biopolymers 2015