Project name: 2p0w bound default 3 runA KGGKGLGKGGAKRHR ss: CCCCCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:19:17, status changed: 2015-03-13 11:26:28

Project settings
Peptide sequence KGGKGLGKGGAKRHR
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
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model_6 View
model_7 View
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model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 31.2011 5.83313 20.7787 182
cluster_2.pdb ( medoid) 22.8844 5.33114 19.6691 122
cluster_3.pdb ( medoid) 14.6029 8.83387 21.7097 129
cluster_4.pdb ( medoid) 10.1086 8.60654 24.8671 87
cluster_5.pdb ( medoid) 8.40043 11.428 34.9483 96
cluster_6.pdb ( medoid) 8.17965 10.5139 27.9194 86
cluster_7.pdb ( medoid) 6.2172 13.6717 46.6771 85
cluster_8.pdb ( medoid) 5.63942 12.5899 29.4044 71
cluster_9.pdb ( medoid) 5.3061 18.6578 60.0761 99
cluster_10.pdb ( medoid) 2.04195 21.0583 46.4254 43
Laboratory of Theory of Biopolymers 2015