Project name: 2o9v bound default A VPPPVPPPPS ss: CCCCCCCCCC

Status: done

submitted: 2015-02-19 18:28:30, status changed: 2015-03-13 11:26:33

Project settings
Peptide sequence VPPPVPPPPS
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 43.7016 5.44603 20.438 238
cluster_2.pdb ( medoid) 43.5236 4.8939 18.6002 213
cluster_3.pdb ( medoid) 25.7812 5.81818 27.7113 150
cluster_4.pdb ( medoid) 16.8214 4.63695 13.3796 78
cluster_5.pdb ( medoid) 16.3368 5.75389 18.6443 94
cluster_6.pdb ( medoid) 12.0922 6.45042 17.345 78
cluster_7.pdb ( medoid) 7.41651 5.25854 16.2698 39
cluster_8.pdb ( medoid) 4.5181 9.07462 18.6341 41
cluster_9.pdb ( medoid) 4.3444 5.98472 12.9988 26
cluster_10.pdb ( medoid) 3.65004 11.7807 26.0081 43
Laboratory of Theory of Biopolymers 2015