Project name: 2b9h bound default A RRNLKGLNLNLH ss: CCCCCCCCCCCC

Status: done

submitted: 2015-02-19 18:28:24, status changed: 2015-03-13 11:27:23

Project settings
Peptide sequence RRNLKGLNLNLH
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
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model_6 View
model_7 View
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model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 77.1482 1.29621 3.46422 100
cluster_2.pdb ( medoid) 37.5108 2.63924 20.4028 99
cluster_3.pdb ( medoid) 25.9682 4.12043 32.7906 107
cluster_4.pdb ( medoid) 16.3776 6.77757 29.8332 111
cluster_5.pdb ( medoid) 16.1721 9.27526 31.9744 150
cluster_6.pdb ( medoid) 12.9509 12.586 40.7715 163
cluster_7.pdb ( medoid) 10.7683 5.10759 16.2689 55
cluster_8.pdb ( medoid) 9.64403 9.53958 20.5472 92
cluster_9.pdb ( medoid) 7.5851 6.32819 34.4199 48
cluster_10.pdb ( medoid) 5.70703 13.1417 28.0841 75
Laboratory of Theory of Biopolymers 2015