Project name: 1aqd_A-D_YHPSPR

Status: done

submitted: 2023-06-02 08:55:25, status changed: 2023-06-03 01:49:10

Project settings
Peptide sequence YHPSPR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 29.5225 4.53891 17.0777 134
cluster_2.pdb ( medoid) 27.2706 5.72046 46.815 156
cluster_3.pdb ( medoid) 26.1963 7.59648 30.5026 199
cluster_4.pdb ( medoid) 22.6174 2.56439 7.33679 58
cluster_5.pdb ( medoid) 14.2449 9.12609 46.3006 130
cluster_6.pdb ( medoid) 13.1357 3.5019 24.7796 46
cluster_7.pdb ( medoid) 12.9394 6.95548 31.3913 90
cluster_8.pdb ( medoid) 12.4033 9.11045 22.0135 113
cluster_9.pdb ( medoid) 6.27584 8.1264 16.5001 51
cluster_10.pdb ( medoid) 2.03496 11.3024 28.5927 23