Project name: 1dv8

Status: done

submitted: 2018-01-11 19:10:59, status changed: 2018-01-12 01:59:49

Project settings
Protein sequence(s) CPVNWVEHERSCYWFSRSGKAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETEL input pdb
Peptide sequence PRPRARS
Simulation mc cycles200
Peptide secondary structure CCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 73.6202 1.58924 8.16249 117
cluster_2.pdb ( medoid) 38.1464 3.32928 12.3068 127
cluster_3.pdb ( medoid) 33.6188 6.00854 18.429 202
cluster_4.pdb ( medoid) 32.9204 3.91854 21.7785 129
cluster_5.pdb ( medoid) 26.7349 3.62821 8.76178 97
cluster_6.pdb ( medoid) 21.2201 3.81713 10.2584 81
cluster_7.pdb ( medoid) 17.8433 5.60436 23.3231 100
cluster_8.pdb ( medoid) 16.8593 6.34663 22.462 107
cluster_9.pdb ( medoid) 2.68098 10.8169 27.4144 29
cluster_10.pdb ( medoid) 1.2924 8.5113 13.6877 11

 
Laboratory of Theory of Biopolymers 2015