Project name: dfa9853e4d981e1

Status: done

submitted: 2018-10-09 06:53:32, status changed: 2018-10-09 17:51:52

Project settings
Peptide sequence HGRGDLGRLKK
Simulation mc cycles50
Peptide secondary structure psipred CCCCCHHHCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 23.2163 6.15947 21.9512 143
cluster_2.pdb ( medoid) 23.0713 4.94121 47.7402 114
cluster_3.pdb ( medoid) 21.4349 8.07097 21.1061 173
cluster_4.pdb ( medoid) 10.3098 9.02052 30.5091 93
cluster_5.pdb ( medoid) 9.95842 13.456 48.0658 134
cluster_6.pdb ( medoid) 8.3212 14.9017 39.2962 124
cluster_7.pdb ( medoid) 4.90661 10.1903 24.437 50
cluster_8.pdb ( medoid) 3.66962 17.713 45.0761 65
cluster_9.pdb ( medoid) 3.63711 18.1463 42.0157 66
cluster_10.pdb ( medoid) 2.69232 14.1142 32.7667 38

Laboratory of Theory of Biopolymers 2015