Project name: 1V49 unbound default 3 run A GGDDDWTHLS ss: CCCCCCCCCC

Status: done

submitted: 2015-02-25 18:47:42, status changed: 2015-03-13 11:27:44

Project settings
Protein sequence(s) MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG input pdb
Peptide sequence GGDDDWTHLS
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 35.8915 2.08963 8.58636 75
cluster_2.pdb ( medoid) 24.7597 5.25046 13.8002 130
cluster_3.pdb ( medoid) 23.2813 7.94629 18.2564 185
cluster_4.pdb ( medoid) 22.2844 5.7888 19.3202 129
cluster_5.pdb ( medoid) 21.0491 6.88864 23.8894 145
cluster_6.pdb ( medoid) 16.2047 4.25802 8.76878 69
cluster_7.pdb ( medoid) 12.5626 5.97008 28.6933 75
cluster_8.pdb ( medoid) 10.1294 6.31824 19.3945 64
cluster_9.pdb ( medoid) 6.77996 7.96465 19.8179 54
cluster_10.pdb ( medoid) 5.71433 12.9499 28.9407 74
Laboratory of Theory of Biopolymers 2015