Project name: e1e29314d40c10e

Status: done

submitted: 2018-07-05 12:20:30, status changed: 2018-07-20 15:38:05

Project settings
Protein sequence(s) EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDA input pdb
Peptide sequence VEITPNSPRAEA
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 32.9292 3.06718 19.9691 101
cluster_2.pdb ( medoid) 29.5572 3.75543 14.8149 111
cluster_3.pdb ( medoid) 23.0291 6.47008 39.6579 149
cluster_4.pdb ( medoid) 21.9698 4.50618 15.5245 99
cluster_5.pdb ( medoid) 15.3985 7.79296 34.487 120
cluster_6.pdb ( medoid) 14.857 8.95199 22.1755 133
cluster_7.pdb ( medoid) 13.7857 8.63216 29.6329 119
cluster_8.pdb ( medoid) 8.09999 7.40741 20.0972 60
cluster_9.pdb ( medoid) 7.33079 9.27594 16.7521 68
cluster_10.pdb ( medoid) 6.37197 6.27749 23.5879 40

 
Laboratory of Theory of Biopolymers 2015