Project name: 2hpl bound default A DDLYG ss: CCCCC

Status: done

submitted: 2015-02-19 18:28:28, status changed: 2015-03-13 11:28:21

Project settings
Protein sequence(s) SASPAVAELCQNTPETFLEASKLLLTYADNILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAIERSS input pdb
Peptide sequence DDLYG
Simulation mc cycles50
Peptide secondary structure CCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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model_7 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 61.8841 3.66814 20.8507 227
cluster_2.pdb ( medoid) 47.868 3.82301 15.0525 183
cluster_3.pdb ( medoid) 40.0468 2.77176 23.1703 111
cluster_4.pdb ( medoid) 21.2932 4.27367 8.98449 91
cluster_5.pdb ( medoid) 14.8044 4.72831 14.9099 70
cluster_6.pdb ( medoid) 10.9954 10.5498 41.2021 116
cluster_7.pdb ( medoid) 10.1324 7.30331 17.8297 74
cluster_8.pdb ( medoid) 3.68487 14.1118 36.3426 52
cluster_9.pdb ( medoid) 2.92036 13.697 33.3545 40
cluster_10.pdb ( medoid) 2.72946 13.1894 30.4983 36
Laboratory of Theory of Biopolymers 2015