Project name: 2IOG unbound default 3 run A KILHRLLQD ss: CHHHHHHHC

Status: done

submitted: 2015-02-25 18:47:37, status changed: 2015-03-13 11:28:44

Project settings
Protein sequence(s) SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHRLHA input pdb
Peptide sequence KILHRLLQD
Simulation mc cycles50
Peptide secondary structure CHHHHHHHC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
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model_4 Download
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model_6 Download
model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 76.487 1.34663 10.0637 103
cluster_2.pdb ( medoid) 56.5966 2.3323 6.95883 132
cluster_3.pdb ( medoid) 26.5077 5.80963 28.7915 154
cluster_4.pdb ( medoid) 26.1144 6.35665 22.9465 166
cluster_5.pdb ( medoid) 19.5858 4.74834 26.9792 93
cluster_6.pdb ( medoid) 18.5701 12.0085 38.0754 223
cluster_7.pdb ( medoid) 13.3699 3.51535 11.6002 47
cluster_8.pdb ( medoid) 7.76882 4.76263 18.8805 37
cluster_9.pdb ( medoid) 2.41017 8.29818 16.8568 20
cluster_10.pdb ( medoid) 1.46284 17.0901 43.7267 25
Laboratory of Theory of Biopolymers 2015