Project name: 5lwm6

Status: done

submitted: 2023-06-02 07:39:23, status changed: 2023-06-02 14:28:54

Project settings
Peptide sequence AYRLKYTFG
Simulation mc cycles50
Peptide secondary structure psipred CCCCEEECC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 47.502 2.82094 26.6893 134
cluster_2.pdb ( medoid) 29.1614 3.94357 25.8178 115
cluster_3.pdb ( medoid) 20.563 4.18228 20.7753 86
cluster_4.pdb ( medoid) 16.8781 9.539 34.4754 161
cluster_5.pdb ( medoid) 13.762 7.12106 29.7526 98
cluster_6.pdb ( medoid) 13.1148 8.31123 30.0943 109
cluster_7.pdb ( medoid) 9.85678 10.8555 34.9633 107
cluster_8.pdb ( medoid) 7.60146 6.84079 23.8066 52
cluster_9.pdb ( medoid) 6.96622 12.7759 36.0553 89
cluster_10.pdb ( medoid) 3.17101 15.4525 36.8868 49