Project name: 5lwm9

Status: done

submitted: 2023-06-02 07:49:11, status changed: 2023-06-02 14:35:15

Project settings
Peptide sequence LKYTFGVDF
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 24.8961 6.74803 23.6078 168
cluster_2.pdb ( medoid) 24.4662 4.74124 21.5657 116
cluster_3.pdb ( medoid) 21.2308 8.00725 26.1172 170
cluster_4.pdb ( medoid) 18.4417 5.69363 27.1427 105
cluster_5.pdb ( medoid) 13.7418 11.3522 24.0945 156
cluster_6.pdb ( medoid) 10.9716 8.56761 33.1172 94
cluster_7.pdb ( medoid) 8.05981 8.18878 25.9455 66
cluster_8.pdb ( medoid) 4.1005 9.02329 25.981 37
cluster_9.pdb ( medoid) 3.42104 10.2308 20.9826 35
cluster_10.pdb ( medoid) 3.17316 16.7026 38.6156 53