Project name: 2o4j bound default 3 runA KNHPMLMNLLKD ss: CCCHHHHHHHCC

Status: done

submitted: 2015-02-23 11:19:16, status changed: 2015-03-13 11:29:07

Project settings
Peptide sequence KNHPMLMNLLKD
Simulation mc cycles50
Peptide secondary structure CCCHHHHHHHCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
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replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 36.8028 5.81477 31.4329 214
cluster_2.pdb ( medoid) 27.3612 4.64161 20.1119 127
cluster_3.pdb ( medoid) 22.2293 8.05243 29.7344 179
cluster_4.pdb ( medoid) 21.3461 5.34055 29.3714 114
cluster_5.pdb ( medoid) 10.7468 6.23444 29.0897 67
cluster_6.pdb ( medoid) 8.70754 12.9773 40.2741 113
cluster_7.pdb ( medoid) 6.61388 6.04789 19.8533 40
cluster_8.pdb ( medoid) 6.2129 5.31153 19.7533 33
cluster_9.pdb ( medoid) 5.16777 11.8039 23.7941 61
cluster_10.pdb ( medoid) 3.25755 15.9629 30.3646 52
Laboratory of Theory of Biopolymers 2015