Project name: 5lwm10

Status: done

submitted: 2023-06-02 07:51:08, status changed: 2023-06-02 14:34:51

Project settings
Peptide sequence YTFGVDFGT
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 60.1051 3.67689 9.01533 221
cluster_2.pdb ( medoid) 49.4715 2.30436 31.3071 114
cluster_3.pdb ( medoid) 18.5026 3.08064 6.60506 57
cluster_4.pdb ( medoid) 16.9335 4.96059 11.546 84
cluster_5.pdb ( medoid) 16.1194 7.44442 36.8241 120
cluster_6.pdb ( medoid) 14.9619 3.74284 8.11069 56
cluster_7.pdb ( medoid) 11.9644 5.7671 13.7981 69
cluster_8.pdb ( medoid) 11.2771 6.65067 22.4981 75
cluster_9.pdb ( medoid) 8.39309 10.9614 33.7946 92
cluster_10.pdb ( medoid) 6.44251 17.3845 31.2886 112