Project name: 2LNS_B2

Status: done

submitted: 2018-10-11 13:54:38, status changed: 2018-10-11 23:47:19

Project settings
Protein sequence(s) IDPFTPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLVYETTDKHLSPDGQYVPRIMFVDPSLTVRADITGRYSNRLYAYEPADTALLLDNMKKALKLLKTEL input pdb
Peptide sequence PTTIYY
Simulation mc cycles150
Peptide secondary structure CCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 39.8182 3.56621 18.1049 142
cluster_2.pdb ( medoid) 31.0229 4.54503 19.8964 141
cluster_3.pdb ( medoid) 25.2852 6.72329 29.426 170
cluster_4.pdb ( medoid) 20.1975 3.1192 15.9617 63
cluster_5.pdb ( medoid) 14.9762 8.68044 22.7096 130
cluster_6.pdb ( medoid) 14.3191 8.52008 24.1207 122
cluster_7.pdb ( medoid) 12.5836 7.15218 26.2289 90
cluster_8.pdb ( medoid) 9.42738 5.728 13.1474 54
cluster_9.pdb ( medoid) 6.19794 7.90585 22.3828 49
cluster_10.pdb ( medoid) 5.10853 7.63429 21.711 39

 
Laboratory of Theory of Biopolymers 2015