Project name: 2H3L unbound default 2 run A EYLGLDVPV ss: CCCCCCCCC

Status: done

submitted: 2015-02-25 18:46:48, status changed: 2015-03-13 11:29:45

Project settings
Peptide sequence EYLGLDVPV
Simulation mc cycles50
Peptide secondary structure CCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 228.874 0.463137 4.6107 106
cluster_2.pdb ( medoid) 39.0931 2.02082 19.4278 79
cluster_3.pdb ( medoid) 23.7502 5.221 15.8515 124
cluster_4.pdb ( medoid) 20.1534 4.76347 11.4481 96
cluster_5.pdb ( medoid) 17.622 9.02282 27.5154 159
cluster_6.pdb ( medoid) 15.4207 10.635 26.2211 164
cluster_7.pdb ( medoid) 15.1905 4.80563 14.2846 73
cluster_8.pdb ( medoid) 14.6738 6.47414 28.0406 95
cluster_9.pdb ( medoid) 13.2987 5.26366 9.81923 70
cluster_10.pdb ( medoid) 2.64654 12.8469 27.7768 34
Laboratory of Theory of Biopolymers 2015