Project name: 1n12 bound default C SDVAFRGNLLD ss: CEEEEEEEEEC

Status: done

submitted: 2015-02-19 18:28:15, status changed: 2015-03-13 11:30:41

Project settings
Peptide sequence SDVAFRGNLLD
Simulation mc cycles50
Peptide secondary structure CEEEEEEEEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 25.3608 4.45569 22.7669 113
cluster_2.pdb ( medoid) 13.2321 9.22 24.127 122
cluster_3.pdb ( medoid) 12.256 11.8309 23.4193 145
cluster_4.pdb ( medoid) 10.9447 11.3297 27.2927 124
cluster_5.pdb ( medoid) 10.03 10.8674 25.9594 109
cluster_6.pdb ( medoid) 9.27363 13.0478 29.9619 121
cluster_7.pdb ( medoid) 9.1021 10.1076 26.9851 92
cluster_8.pdb ( medoid) 8.25883 7.38603 28.3042 61
cluster_9.pdb ( medoid) 8.12762 6.52098 23.8787 53
cluster_10.pdb ( medoid) 5.1911 11.5582 29.8793 60
Laboratory of Theory of Biopolymers 2015